• STvEA: an R package for the analysis and integration of matching CODEX and CITE-seq data sets. [GitHub].

  • RayleighSelection: an R package for feature selection in topological spaces derived from point clouds. [GitHub].

  • scTDA: an object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data. [GitHub] [Docker]

  • TARGet: topological inference of horizontal evolution from multiple sequence alignments. [GitHub].